PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 147aa    MW: 17084 Da    PI: 9.254
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25550.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.1e-3267125159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK vk+++fprsYYrCt+ gC+vkk+v+r ++d++vv++tYeg H h+
  KFK25550.1  67 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTHDQEVVVTTYEGVHSHP 125
                 59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-3352125IPR003657WRKY domain
SuperFamilySSF1182901.7E-2959126IPR003657WRKY domain
PROSITE profilePS5081130.15962127IPR003657WRKY domain
SMARTSM007749.1E-3867126IPR003657WRKY domain
PfamPF031061.6E-2668125IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEGYDNGSLY APFLSLKSHQ NVSKLELNQG EEEASNVREG SSKSLESNKK GKKQRYAFQT  60
RSQVDILDDG YRWRKYGQKA VKNNKFPRSY YRCTYGGCNV KKQVQRLTHD QEVVVTTYEG  120
VHSHPIEKCT ENFEHILTQM QIYSSFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2857124774Probable WRKY transcription factor 4
2lex_A2e-2857124774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527741e-144AK352774.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-I01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131315.15e-94PREDICTED: probable WRKY transcription factor 75
RefseqXP_013728203.15e-94PREDICTED: probable WRKY transcription factor 75
SwissprotQ9FYA27e-84WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLA0A087G6P81e-108A0A087G6P8_ARAAL; Uncharacterized protein
STRINGBra006178.1-P1e-93(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.14e-85WRKY DNA-binding protein 75